diff --git a/install/batocera.json b/install/batocera.json
index 3bb36e1d..97796b11 100644
--- a/install/batocera.json
+++ b/install/batocera.json
@@ -30,7 +30,9 @@
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
           "$HOME/.local/share/suyu/keys",
-          "$HOME/.config/Ryujinx/system"
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys",
+          "$HOME/.config/Ryujinx/system",
+          "$HOME/.var/app/io.github.ryubing.Ryujinx/config/Ryujinx/system"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -53,7 +55,8 @@
           "$HOME/.local/share/yuzu/keys",
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
-          "$HOME/.local/share/suyu/keys"
+          "$HOME/.local/share/suyu/keys",
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -71,7 +74,8 @@
       "file": "Citra/sysdata/aes_keys.txt",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -82,7 +86,8 @@
       "file": "Citra/sysdata/boot9.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -93,7 +98,8 @@
       "pattern": "scph*.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/duckstation/bios"
+          "$HOME/.local/share/duckstation/bios",
+          "$HOME/.var/app/org.duckstation.DuckStation/config/duckstation/bios"
         ],
         "windows": [
           "%LOCALAPPDATA%\\DuckStation\\bios",
@@ -124,7 +130,8 @@
       "note": "PS3 firmware (PS3UPDAT.PUP) found. Install via RPCS3 > File > Install Firmware.",
       "detect": {
         "linux": [
-          "$HOME/.config/rpcs3"
+          "$HOME/.config/rpcs3",
+          "$HOME/.var/app/net.rpcs3.RPCS3/config/rpcs3"
         ],
         "windows": [
           "%APPDATA%\\rpcs3"
@@ -136,7 +143,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/USA"
+          "$HOME/.local/share/dolphin-emu/GC/USA",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/USA"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\USA"
@@ -151,7 +159,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/EUR"
+          "$HOME/.local/share/dolphin-emu/GC/EUR",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/EUR"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\EUR"
@@ -166,7 +175,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/JAP"
+          "$HOME/.local/share/dolphin-emu/GC/JAP",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/JAP"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\JAP"
@@ -181,7 +191,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -197,7 +208,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -212,7 +224,8 @@
       "file": "PPSSPP/ppge_atlas.zim",
       "targets": {
         "linux": [
-          "$HOME/.config/ppsspp/PSP/SYSTEM"
+          "$HOME/.config/ppsspp/PSP/SYSTEM",
+          "$HOME/.var/app/org.ppsspp.PPSSPP/config/ppsspp/PSP/SYSTEM"
         ],
         "windows": [
           "%USERPROFILE%\\Documents\\PPSSPP\\PSP\\SYSTEM"
diff --git a/install/emudeck.json b/install/emudeck.json
index df306c7a..63e2d938 100644
--- a/install/emudeck.json
+++ b/install/emudeck.json
@@ -37,7 +37,9 @@
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
           "$HOME/.local/share/suyu/keys",
-          "$HOME/.config/Ryujinx/system"
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys",
+          "$HOME/.config/Ryujinx/system",
+          "$HOME/.var/app/io.github.ryubing.Ryujinx/config/Ryujinx/system"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -59,7 +61,8 @@
           "$HOME/.local/share/yuzu/keys",
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
-          "$HOME/.local/share/suyu/keys"
+          "$HOME/.local/share/suyu/keys",
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -77,7 +80,8 @@
       "file": "Citra/sysdata/aes_keys.txt",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -89,7 +93,8 @@
       "file": "Citra/sysdata/boot9.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -100,7 +105,8 @@
       "pattern": "scph*.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/duckstation/bios"
+          "$HOME/.local/share/duckstation/bios",
+          "$HOME/.var/app/org.duckstation.DuckStation/config/duckstation/bios"
         ],
         "windows": [
           "%LOCALAPPDATA%\\DuckStation\\bios",
@@ -131,7 +137,8 @@
       "note": "PS3 firmware (PS3UPDAT.PUP) found. Install via RPCS3 > File > Install Firmware.",
       "detect": {
         "linux": [
-          "$HOME/.config/rpcs3"
+          "$HOME/.config/rpcs3",
+          "$HOME/.var/app/net.rpcs3.RPCS3/config/rpcs3"
         ],
         "windows": [
           "%APPDATA%\\rpcs3"
@@ -143,7 +150,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/USA"
+          "$HOME/.local/share/dolphin-emu/GC/USA",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/USA"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\USA"
@@ -158,7 +166,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/EUR"
+          "$HOME/.local/share/dolphin-emu/GC/EUR",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/EUR"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\EUR"
@@ -173,7 +182,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/JAP"
+          "$HOME/.local/share/dolphin-emu/GC/JAP",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/JAP"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\JAP"
@@ -188,7 +198,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -204,7 +215,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -219,7 +231,8 @@
       "file": "PPSSPP/ppge_atlas.zim",
       "targets": {
         "linux": [
-          "$HOME/.config/ppsspp/PSP/SYSTEM"
+          "$HOME/.config/ppsspp/PSP/SYSTEM",
+          "$HOME/.var/app/org.ppsspp.PPSSPP/config/ppsspp/PSP/SYSTEM"
         ],
         "windows": [
           "%USERPROFILE%\\Documents\\PPSSPP\\PSP\\SYSTEM"
diff --git a/install/recalbox.json b/install/recalbox.json
index 79666eb2..998bc04e 100644
--- a/install/recalbox.json
+++ b/install/recalbox.json
@@ -30,7 +30,9 @@
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
           "$HOME/.local/share/suyu/keys",
-          "$HOME/.config/Ryujinx/system"
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys",
+          "$HOME/.config/Ryujinx/system",
+          "$HOME/.var/app/io.github.ryubing.Ryujinx/config/Ryujinx/system"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -52,7 +54,8 @@
           "$HOME/.local/share/yuzu/keys",
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
-          "$HOME/.local/share/suyu/keys"
+          "$HOME/.local/share/suyu/keys",
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -69,7 +72,8 @@
       "file": "Citra/sysdata/aes_keys.txt",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -80,7 +84,8 @@
       "file": "Citra/sysdata/boot9.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -91,7 +96,8 @@
       "pattern": "scph*.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/duckstation/bios"
+          "$HOME/.local/share/duckstation/bios",
+          "$HOME/.var/app/org.duckstation.DuckStation/config/duckstation/bios"
         ],
         "windows": [
           "%LOCALAPPDATA%\\DuckStation\\bios",
@@ -122,7 +128,8 @@
       "note": "PS3 firmware (PS3UPDAT.PUP) found. Install via RPCS3 > File > Install Firmware.",
       "detect": {
         "linux": [
-          "$HOME/.config/rpcs3"
+          "$HOME/.config/rpcs3",
+          "$HOME/.var/app/net.rpcs3.RPCS3/config/rpcs3"
         ],
         "windows": [
           "%APPDATA%\\rpcs3"
@@ -134,7 +141,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/USA"
+          "$HOME/.local/share/dolphin-emu/GC/USA",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/USA"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\USA"
@@ -149,7 +157,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/EUR"
+          "$HOME/.local/share/dolphin-emu/GC/EUR",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/EUR"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\EUR"
@@ -164,7 +173,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/JAP"
+          "$HOME/.local/share/dolphin-emu/GC/JAP",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/JAP"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\JAP"
@@ -179,7 +189,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -195,7 +206,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -210,7 +222,8 @@
       "file": "PPSSPP/ppge_atlas.zim",
       "targets": {
         "linux": [
-          "$HOME/.config/ppsspp/PSP/SYSTEM"
+          "$HOME/.config/ppsspp/PSP/SYSTEM",
+          "$HOME/.var/app/org.ppsspp.PPSSPP/config/ppsspp/PSP/SYSTEM"
         ],
         "windows": [
           "%USERPROFILE%\\Documents\\PPSSPP\\PSP\\SYSTEM"
diff --git a/install/retroarch.json b/install/retroarch.json
index 6182b531..14eef328 100644
--- a/install/retroarch.json
+++ b/install/retroarch.json
@@ -76,7 +76,9 @@
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
           "$HOME/.local/share/suyu/keys",
-          "$HOME/.config/Ryujinx/system"
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys",
+          "$HOME/.config/Ryujinx/system",
+          "$HOME/.var/app/io.github.ryubing.Ryujinx/config/Ryujinx/system"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -98,7 +100,8 @@
           "$HOME/.local/share/yuzu/keys",
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
-          "$HOME/.local/share/suyu/keys"
+          "$HOME/.local/share/suyu/keys",
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -115,7 +118,8 @@
       "file": "Citra/sysdata/aes_keys.txt",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -126,7 +130,8 @@
       "file": "Citra/sysdata/boot9.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -137,7 +142,8 @@
       "pattern": "scph*.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/duckstation/bios"
+          "$HOME/.local/share/duckstation/bios",
+          "$HOME/.var/app/org.duckstation.DuckStation/config/duckstation/bios"
         ],
         "windows": [
           "%LOCALAPPDATA%\\DuckStation\\bios",
@@ -168,7 +174,8 @@
       "note": "PS3 firmware (PS3UPDAT.PUP) found. Install via RPCS3 > File > Install Firmware.",
       "detect": {
         "linux": [
-          "$HOME/.config/rpcs3"
+          "$HOME/.config/rpcs3",
+          "$HOME/.var/app/net.rpcs3.RPCS3/config/rpcs3"
         ],
         "windows": [
           "%APPDATA%\\rpcs3"
@@ -180,7 +187,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/USA"
+          "$HOME/.local/share/dolphin-emu/GC/USA",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/USA"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\USA"
@@ -196,7 +204,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/EUR"
+          "$HOME/.local/share/dolphin-emu/GC/EUR",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/EUR"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\EUR"
@@ -212,7 +221,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/JAP"
+          "$HOME/.local/share/dolphin-emu/GC/JAP",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/JAP"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\JAP"
@@ -228,7 +238,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -244,7 +255,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -259,7 +271,8 @@
       "file": "PPSSPP/ppge_atlas.zim",
       "targets": {
         "linux": [
-          "$HOME/.config/ppsspp/PSP/SYSTEM"
+          "$HOME/.config/ppsspp/PSP/SYSTEM",
+          "$HOME/.var/app/org.ppsspp.PPSSPP/config/ppsspp/PSP/SYSTEM"
         ],
         "windows": [
           "%USERPROFILE%\\Documents\\PPSSPP\\PSP\\SYSTEM"
diff --git a/install/retrobat.json b/install/retrobat.json
index 0c40aab3..6cc84a8f 100644
--- a/install/retrobat.json
+++ b/install/retrobat.json
@@ -28,7 +28,9 @@
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
           "$HOME/.local/share/suyu/keys",
-          "$HOME/.config/Ryujinx/system"
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys",
+          "$HOME/.config/Ryujinx/system",
+          "$HOME/.var/app/io.github.ryubing.Ryujinx/config/Ryujinx/system"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -51,7 +53,8 @@
           "$HOME/.local/share/yuzu/keys",
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
-          "$HOME/.local/share/suyu/keys"
+          "$HOME/.local/share/suyu/keys",
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -69,7 +72,8 @@
       "file": "Citra/sysdata/aes_keys.txt",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -80,7 +84,8 @@
       "file": "Citra/sysdata/boot9.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -91,7 +96,8 @@
       "pattern": "scph*.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/duckstation/bios"
+          "$HOME/.local/share/duckstation/bios",
+          "$HOME/.var/app/org.duckstation.DuckStation/config/duckstation/bios"
         ],
         "windows": [
           "%LOCALAPPDATA%\\DuckStation\\bios",
@@ -122,7 +128,8 @@
       "note": "PS3 firmware (PS3UPDAT.PUP) found. Install via RPCS3 > File > Install Firmware.",
       "detect": {
         "linux": [
-          "$HOME/.config/rpcs3"
+          "$HOME/.config/rpcs3",
+          "$HOME/.var/app/net.rpcs3.RPCS3/config/rpcs3"
         ],
         "windows": [
           "%APPDATA%\\rpcs3"
@@ -134,7 +141,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/USA"
+          "$HOME/.local/share/dolphin-emu/GC/USA",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/USA"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\USA"
@@ -149,7 +157,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/EUR"
+          "$HOME/.local/share/dolphin-emu/GC/EUR",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/EUR"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\EUR"
@@ -164,7 +173,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/JAP"
+          "$HOME/.local/share/dolphin-emu/GC/JAP",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/JAP"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\JAP"
@@ -179,7 +189,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -195,7 +206,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -210,7 +222,8 @@
       "file": "PPSSPP/ppge_atlas.zim",
       "targets": {
         "linux": [
-          "$HOME/.config/ppsspp/PSP/SYSTEM"
+          "$HOME/.config/ppsspp/PSP/SYSTEM",
+          "$HOME/.var/app/org.ppsspp.PPSSPP/config/ppsspp/PSP/SYSTEM"
         ],
         "windows": [
           "%USERPROFILE%\\Documents\\PPSSPP\\PSP\\SYSTEM"
diff --git a/install/retrodeck.json b/install/retrodeck.json
index 287d511e..721b4320 100644
--- a/install/retrodeck.json
+++ b/install/retrodeck.json
@@ -24,7 +24,9 @@
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
           "$HOME/.local/share/suyu/keys",
-          "$HOME/.config/Ryujinx/system"
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys",
+          "$HOME/.config/Ryujinx/system",
+          "$HOME/.var/app/io.github.ryubing.Ryujinx/config/Ryujinx/system"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -46,7 +48,8 @@
           "$HOME/.local/share/yuzu/keys",
           "$HOME/.local/share/eden/keys",
           "$HOME/.local/share/citron/keys",
-          "$HOME/.local/share/suyu/keys"
+          "$HOME/.local/share/suyu/keys",
+          "$HOME/.var/app/dev.eden_emu.eden/data/eden/keys"
         ],
         "windows": [
           "%APPDATA%\\yuzu\\keys",
@@ -63,7 +66,8 @@
       "file": "Citra/sysdata/aes_keys.txt",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -75,7 +79,8 @@
       "file": "Citra/sysdata/boot9.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/azahar/sysdata"
+          "$HOME/.local/share/azahar-emu/sysdata",
+          "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata"
         ],
         "windows": [
           "%APPDATA%\\Azahar\\sysdata"
@@ -87,7 +92,8 @@
       "pattern": "scph*.bin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/duckstation/bios"
+          "$HOME/.local/share/duckstation/bios",
+          "$HOME/.var/app/org.duckstation.DuckStation/config/duckstation/bios"
         ],
         "windows": [
           "%LOCALAPPDATA%\\DuckStation\\bios",
@@ -118,7 +124,8 @@
       "note": "PS3 firmware (PS3UPDAT.PUP) found. Install via RPCS3 > File > Install Firmware.",
       "detect": {
         "linux": [
-          "$HOME/.config/rpcs3"
+          "$HOME/.config/rpcs3",
+          "$HOME/.var/app/net.rpcs3.RPCS3/config/rpcs3"
         ],
         "windows": [
           "%APPDATA%\\rpcs3"
@@ -130,7 +137,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/USA"
+          "$HOME/.local/share/dolphin-emu/GC/USA",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/USA"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\USA"
@@ -146,7 +154,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/EUR"
+          "$HOME/.local/share/dolphin-emu/GC/EUR",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/EUR"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\EUR"
@@ -162,7 +171,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu/GC/JAP"
+          "$HOME/.local/share/dolphin-emu/GC/JAP",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/JAP"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator\\GC\\JAP"
@@ -178,7 +188,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -194,7 +205,8 @@
       "emulator": "dolphin",
       "targets": {
         "linux": [
-          "$HOME/.local/share/dolphin-emu"
+          "$HOME/.local/share/dolphin-emu",
+          "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu"
         ],
         "windows": [
           "%APPDATA%\\Dolphin Emulator"
@@ -209,7 +221,8 @@
       "file": "PPSSPP/ppge_atlas.zim",
       "targets": {
         "linux": [
-          "$HOME/.config/ppsspp/PSP/SYSTEM"
+          "$HOME/.config/ppsspp/PSP/SYSTEM",
+          "$HOME/.var/app/org.ppsspp.PPSSPP/config/ppsspp/PSP/SYSTEM"
         ],
         "windows": [
           "%USERPROFILE%\\Documents\\PPSSPP\\PSP\\SYSTEM"
diff --git a/platforms/_registry.yml b/platforms/_registry.yml
index 84b9be78..46d7a2b7 100644
--- a/platforms/_registry.yml
+++ b/platforms/_registry.yml
@@ -8,7 +8,9 @@ _standalone_copies: &standalone_copies
       - $HOME/.local/share/eden/keys
       - $HOME/.local/share/citron/keys
       - $HOME/.local/share/suyu/keys
+      - $HOME/.var/app/dev.eden_emu.eden/data/eden/keys
       - $HOME/.config/Ryujinx/system
+      - $HOME/.var/app/io.github.ryubing.Ryujinx/config/Ryujinx/system
       windows:
       - '%APPDATA%\yuzu\keys'
       - '%APPDATA%\eden\keys'
@@ -25,6 +27,7 @@ _standalone_copies: &standalone_copies
       - $HOME/.local/share/eden/keys
       - $HOME/.local/share/citron/keys
       - $HOME/.local/share/suyu/keys
+      - $HOME/.var/app/dev.eden_emu.eden/data/eden/keys
       windows:
       - '%APPDATA%\yuzu\keys'
       - '%APPDATA%\eden\keys'
@@ -36,13 +39,15 @@ _standalone_copies: &standalone_copies
   - file: Citra/sysdata/aes_keys.txt
     targets:
       linux:
-      - $HOME/.local/share/azahar/sysdata
+      - $HOME/.local/share/azahar-emu/sysdata
+      - $HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata
       windows:
       - '%APPDATA%\Azahar\sysdata'
   - file: Citra/sysdata/boot9.bin
     targets:
       linux:
-      - $HOME/.local/share/azahar/sysdata
+      - $HOME/.local/share/azahar-emu/sysdata
+      - $HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata
       windows:
       - '%APPDATA%\Azahar\sysdata'
   # DuckStation (PS1)
@@ -50,6 +55,7 @@ _standalone_copies: &standalone_copies
     targets:
       linux:
       - $HOME/.local/share/duckstation/bios
+      - $HOME/.var/app/org.duckstation.DuckStation/config/duckstation/bios
       windows:
       - '%LOCALAPPDATA%\DuckStation\bios'
       - '%USERPROFILE%\Documents\DuckStation\bios'
@@ -71,6 +77,7 @@ _standalone_copies: &standalone_copies
     detect:
       linux:
       - $HOME/.config/rpcs3
+      - $HOME/.var/app/net.rpcs3.RPCS3/config/rpcs3
       windows:
       - '%APPDATA%\rpcs3'
   # Dolphin (GameCube)
@@ -79,6 +86,7 @@ _standalone_copies: &standalone_copies
     targets:
       linux:
       - $HOME/.local/share/dolphin-emu/GC/USA
+      - $HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/USA
       windows:
       - '%APPDATA%\Dolphin Emulator\GC\USA'
       darwin:
@@ -88,6 +96,7 @@ _standalone_copies: &standalone_copies
     targets:
       linux:
       - $HOME/.local/share/dolphin-emu/GC/EUR
+      - $HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/EUR
       windows:
       - '%APPDATA%\Dolphin Emulator\GC\EUR'
       darwin:
@@ -97,6 +106,7 @@ _standalone_copies: &standalone_copies
     targets:
       linux:
       - $HOME/.local/share/dolphin-emu/GC/JAP
+      - $HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/JAP
       windows:
       - '%APPDATA%\Dolphin Emulator\GC\JAP'
       darwin:
@@ -106,6 +116,7 @@ _standalone_copies: &standalone_copies
     targets:
       linux:
       - $HOME/.local/share/dolphin-emu
+      - $HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu
       windows:
       - '%APPDATA%\Dolphin Emulator'
       darwin:
@@ -115,6 +126,7 @@ _standalone_copies: &standalone_copies
     targets:
       linux:
       - $HOME/.local/share/dolphin-emu
+      - $HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu
       windows:
       - '%APPDATA%\Dolphin Emulator'
       darwin:
@@ -124,6 +136,7 @@ _standalone_copies: &standalone_copies
     targets:
       linux:
       - $HOME/.config/ppsspp/PSP/SYSTEM
+      - $HOME/.var/app/org.ppsspp.PPSSPP/config/ppsspp/PSP/SYSTEM
       windows:
       - '%USERPROFILE%\Documents\PPSSPP\PSP\SYSTEM'
       darwin:
diff --git a/tests/test_install.py b/tests/test_install.py
index fe7f06e6..69465447 100644
--- a/tests/test_install.py
+++ b/tests/test_install.py
@@ -2335,5 +2335,32 @@ class CaseTwinsOnAFoldingVolume(unittest.TestCase):
         self.assertIn("if not case_kept: files, folded = fold_case_twins(files)", source)
 
 
+
+class StandaloneCopiesReachFlatpakInstalls(unittest.TestCase):
+    """Copies went only to native and AppImage directories: Dolphin, PPSSPP
+    and Azahar from Flathub received nothing. Azahar's native Linux
+    directory was wrong too: XDG_DATA_HOME/azahar-emu (common_paths.h
+    EMU_DATA_DIR), not azahar."""
+
+    def test_flatpak_and_native_directories(self):
+        import yaml  # noqa: PLC0415
+
+        registry = yaml.safe_load((REPO_ROOT / "platforms" / "_registry.yml").read_text())
+        linux = {
+            target
+            for entry in registry["_standalone_copies"]
+            for target in (entry.get("targets") or {}).get("linux", [])
+        }
+        for expected in (
+            "$HOME/.var/app/org.DolphinEmu.dolphin-emu/data/dolphin-emu/GC/USA",
+            "$HOME/.var/app/org.ppsspp.PPSSPP/config/ppsspp/PSP/SYSTEM",
+            "$HOME/.var/app/org.azahar_emu.Azahar/data/azahar-emu/sysdata",
+            "$HOME/.local/share/azahar-emu/sysdata",
+        ):
+            with self.subTest(target=expected):
+                self.assertIn(expected, linux)
+        self.assertNotIn("$HOME/.local/share/azahar/sysdata", linux)
+
+
 if __name__ == "__main__":
     unittest.main()