fix: clear an export's old files before writing

An export wrote into its platform directory without removing what an
earlier run left there, so RetroPie scriptmodules and RetroDECK
manifests the current truth no longer corrects stayed beside a
report saying they were untouched. Files the run does not produce
are now removed first.

scripts/export_native.py

@@ -122,6 +122,24 @@ def fetch(
     return payload
 
 
+def _remove_stale(platform_dir: Path, produced: set[str]) -> None:
+    """Remove what an earlier run wrote and this one does not.
+
+    RetroPie writes one scriptmodule per package it corrects and RetroDECK one
+    manifest per component: a package corrected by an older truth kept its
+    file beside a report saying it was no longer touched, and the directory
+    contradicted the run.
+    """
+    if not platform_dir.is_dir():
+        return
+    for path in sorted(platform_dir.rglob("*"), reverse=True):
+        relative = path.relative_to(platform_dir).as_posix()
+        if path.is_file() and relative not in produced:
+            path.unlink()
+        elif path.is_dir() and not any(path.iterdir()):
+            path.rmdir()
+
+
 def pinned_base(wanted: dict[str, str], scraped: dict | None) -> str:
     """The revision our transcription came from, when the YAML records it.
 
@@ -362,6 +380,7 @@ def export_platform(
     issues = exporter.validate(systems, produced)
 
     platform_dir = output_dir / platform
+    _remove_stale(platform_dir, set(produced))
     for relative, content in produced.items():
         path = platform_dir / relative
         path.parent.mkdir(parents=True, exist_ok=True)