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refactor: fix cross-reference archive grouping and path resolution
Group archived files by archive unit in find_undeclared_files instead of reporting individual ROMs. Add path-based fallback for descriptive names (e.g. "SeaBIOS (128 KB)" resolves via path: bios.bin). Update _collect_extras to use archive name for pack resolution. Regenerate database with new bios files. 6 new E2E tests covering archive in_repo, missing archives, descriptive names, and pack extras.
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