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A CI checkout omits every file over 50 MB, so verify and generate_pack resolve those database entries against a disk that does not hold them and report them missing. The generated README then stops matching the committed one for a reason that has nothing to do with staleness. restore_large_files.py writes them back from the release cache, matched by SHA1 rather than by name, and only where the path is gitignored and absent. The site workflow runs it, and refreshes the data directories, before generating.